Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SCFD1 ENSBTAG00000017565

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Description

sec1 family domain containing 1 [Source:VGNC Symbol;Acc:VGNC:34330]

Location

Primary_assembly 21: 41,268,756-41,381,804 forward strand.

ARS-UCD1.3:CM008188.2

About this gene

This gene has 10 transcripts (splice variants), 211 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000097631.1	SCFD1-202	3116	697aa	ENSBTAP00000075798.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000111144.1	SCFD1-208	2152	641aa	ENSBTAP00000087042.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000046085.4	SCFD1-210	2135	631aa	ENSBTAP00000043412.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BG76	-
ENSBTAT00000126421.1	SCFD1-207	2086	614aa	ENSBTAP00000102397.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000111160.1	SCFD1-206	2062	606aa	ENSBTAP00000099053.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000129117.1	SCFD1-205	2029	595aa	ENSBTAP00000081537.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000133772.1	SCFD1-204	2002	586aa	ENSBTAP00000077466.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000134498.1	SCFD1-203	1999	585aa	ENSBTAP00000094584.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000096273.1	SCFD1-201	1820	598aa	ENSBTAP00000091541.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000115615.1	SCFD1-209	1765	507aa	ENSBTAP00000094747.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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