Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PCDHGC3 ENSBTAG00000017349

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Description

protocadherin gamma subfamily B, 4 [Source:NCBI gene (formerly Entrezgene);Acc:532241]

Location

Primary_assembly 7: 52,438,337-52,598,877 forward strand.

ARS-UCD1.3:CM008174.2

About this gene

This gene has 10 transcripts (splice variants), 222 orthologues and 20 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000023076.6	PCDHGC3-207	5712	1275aa	ENSBTAP00000023076.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6QNV3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000023071.6	PCDHGC3-210	4958	1005aa	ENSBTAP00000023071.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5D7F4	-
ENSBTAT00000098740.1	PCDHGC3-202	4928	931aa	ENSBTAP00000092992.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000053597.4	PCDHGC3-205	4803	989aa	ENSBTAP00000052734.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N3M3	-
ENSBTAT00000122301.1	PCDHGC3-204	4803	989aa	ENSBTAP00000103100.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000104415.1	PCDHGC3-203	4773	932aa	ENSBTAP00000080181.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000067388.2	PCDHGC3-209	4760	934aa	ENSBTAP00000072328.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1ML27	-
ENSBTAT00000112186.1	PCDHGC3-208	4757	933aa	ENSBTAP00000077286.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000089131.1	PCDHGC3-206	4735	983aa	ENSBTAP00000085133.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000053499.3	PCDHGC3-201	4648	963aa	ENSBTAP00000048790.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PKJ8	-

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Summary

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