Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SLC27A1 ENSBTAG00000016775

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Description

solute carrier family 27 member 1 [Source:VGNC Symbol;Acc:VGNC:34785]

Location

Primary_assembly 7: 5,605,616-5,646,390 reverse strand.

ARS-UCD1.3:CM008174.2

About this gene

This gene has 5 transcripts (splice variants), 277 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000054482.3	SLC27A1-204	2182	671aa	ENSBTAP00000051970.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MB67	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000088017.1	SLC27A1-205	3026	623aa	ENSBTAP00000100965.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000055878.3	SLC27A1-201	2948	597aa	ENSBTAP00000050547.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4IFM2	-
ENSBTAT00000022311.6	SLC27A1-202	2217	670aa	ENSBTAP00000022311.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4IFM2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000111807.1	SLC27A1-203	1478	407aa	ENSBTAP00000101492.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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