Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HOXA1 ENSBTAG00000013263

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Description

homeobox A1 [Source:VGNC Symbol;Acc:VGNC:29908]

Location

Primary_assembly 4: 68,945,049-68,948,579 forward strand.

ARS-UCD1.3:CM008171.2

About this gene

This gene has 2 transcripts (splice variants), 200 orthologues and 40 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000001367.4	HOXA1-202	2101	333aa	ENSBTAP00000001367.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1B918	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000086969.2	HOXA1-201	690	135aa	ENSBTAP00000061939.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LWW4	-

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Summary

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