Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PMEL ENSBTAG00000004019

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Description

premelanosome protein [Source:VGNC Symbol;Acc:VGNC:33069]

Location

Primary_assembly 5: 57,342,864-57,353,330 forward strand.

ARS-UCD1.3:CM008172.2

About this gene

This gene has 5 transcripts (splice variants), 262 orthologues, 2 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000005250.6	PMEL-201	2364	698aa	ENSBTAP00000005250.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MFK3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000117604.1	PMEL-203	2349	612aa	ENSBTAP00000097835.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000091166.1	PMEL-205	1760	563aa	ENSBTAP00000102942.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000115330.1	PMEL-204	1389	292aa	ENSBTAP00000099907.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000080714.2	PMEL-202	1300	406aa	ENSBTAP00000058497.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LHZ3	-

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Summary

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