Gene: Kdm1a ENSRNOG00000022372

Description

lysine demethylase 1A [Source:RGD Symbol;Acc:1562975]

Gene Synonyms

Aof2, Kdm1, LOC500569, RGD1562975

Location

Primary_assembly 5: 148,782,976-148,838,319 reverse strand.

mRatBN7.2:CM026978.1

About this gene

This gene has 3 transcripts (splice variants), 214 orthologues, 10 paralogues and is associated with 21 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000080881.2	Kdm1a-202	3078	876aa	ENSRNOP00000074048.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K736	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000055992.5	Kdm1a-201	3066	872aa	ENSRNOP00000052846.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3STT9	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000115653.1	Kdm1a-203	3006	852aa	ENSRNOP00000078937.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G2K8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,