DNA ligase 1 [Source:VGNC Symbol;Acc:VGNC:10202]
Chromosome 19: 50,213,063-50,267,145 reverse strand.
Pan_tro_3.0:CM000333.3
This gene has 4 transcripts (splice variants), 193 orthologues and 2 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSPTRT00000020863.4 | LIG1-201 | 3379 | 919aa | ENSPTRP00000019263.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A6D2XN60 K7DLA3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| ENSPTRT00000076632.1 | LIG1-204 | 3809 | 801aa | ENSPTRP00000069169.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2J8K1W0 A0A6D2Y953 | - |
| ENSPTRT00000077068.1 | LIG1-202 | 2667 | 888aa | ENSPTRP00000091247.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3TPS8 A0A6D2WRC6 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSPTRT00000104015.1 | LIG1-203 | 2556 | 851aa | ENSPTRP00000078614.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3SNJ3 A0A6D2Y231 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
