Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
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  - Gene tree
  - Orthologues
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Ontologies
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Genetic Variation
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External references
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ID History
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Gene: Lsmem1 ENSMUSG00000071342

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Description

leucine-rich single-pass membrane protein 1 [Source:MGI Symbol;Acc:MGI:2685735]

Gene Synonyms

Gm889, LOC380755

Location

Chromosome 12: 40,225,492-40,249,489 reverse strand.

GRCm39:CM001005.3

About this gene

This gene has 2 transcripts (splice variants) and 114 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000095760.3	Lsmem1-201	1213	128aa	ENSMUSP00000093434.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS25892	B2RVW5 Q3UQS2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000220951.2	Lsmem1-202	2152	85aa	ENSMUSP00000152529.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3UQS2-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

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Summary

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