Gene: Kdm3b ENSMUSG00000038773

Description

KDM3B lysine (K)-specific demethylase 3B [Source:MGI Symbol;Acc:MGI:1923356]

Gene Synonyms

5830462I21Rik, JHDM2B, Jmjd1b

Location

Chromosome 18: 34,910,100-34,971,713 forward strand.

GRCm39:CM001011.3

About this gene

This gene has 7 transcripts (splice variants), 213 orthologues, 3 paralogues and is associated with 31 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000043775.9	Kdm3b-201	6363	1762aa	ENSMUSP00000037628.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37761	Q6ZPY7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000224715.2	Kdm3b-204	2032	481aa	ENSMUSP00000153295.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3UI14	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000225195.2	Kdm3b-206	5723	1333aa	ENSMUSP00000153446.2	Nonsense mediated decay		A0A286YDJ6	-
ENSMUST00000225260.2	Kdm3b-207	3498	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000223567.2	Kdm3b-202	2997	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000224065.2	Kdm3b-203	42	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000225047.2	Kdm3b-205	2638	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Gene: Kdm3b ENSMUSG00000038773

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Gene: Kdm3b ENSMUSG00000038773

Summary

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