Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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- Orthologues
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  - Orthologues
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Ontologies
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Gene: 1700020L24Rik ENSMUSG00000035085

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Description

RIKEN cDNA 1700020L24 gene [Source:MGI Symbol;Acc:MGI:1913580]

Location

Chromosome 11: 83,328,503-83,332,059 forward strand.

GRCm39:CM001004.3

About this gene

This gene has 2 transcripts (splice variants) and 89 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000037378.6	1700020L24Rik-201	949	189aa	ENSMUSP00000042098.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS25165	Q8C1R3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000188702.2	1700020L24Rik-202	564	111aa	ENSMUSP00000140664.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A087WRJ9	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Summary

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