Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
Phenotypes
Genetic Variation
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Pathway
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External references
Supporting evidence
ID History
- Gene history

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Gene: 2210408I21Rik ENSMUSG00000071252

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Description

RIKEN cDNA 2210408I21 gene [Source:MGI Symbol;Acc:MGI:1919621]

Location

Chromosome 13: 77,283,659-77,761,903 forward strand.

GRCm39:CM001006.3

About this gene

This gene has 5 transcripts (splice variants), 157 orthologues and is associated with 17 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000168779.3	2210408I21Rik-201	5051	1272aa	ENSMUSP00000127449.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49316	Q3UPC7-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000225605.2	2210408I21Rik-202	1539	324aa	ENSMUSP00000153096.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3UPC7-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000225760.2	2210408I21Rik-203	594	198aa	ENSMUSP00000153269.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YD44	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000225960.2	2210408I21Rik-204	522	46aa	ENSMUSP00000153525.2	Nonsense mediated decay		A0A286YDQ9	-
ENSMUST00000225992.2	2210408I21Rik-205	616	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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