Gene: Susd4 ENSMUSG00000038576

Description

sushi domain containing 4 [Source:MGI Symbol;Acc:MGI:2138351]

Gene Synonyms

E430021N18Rik

Location

Chromosome 1: 182,591,425-182,724,156 forward strand.

GRCm39:CM000994.3

About this gene

This gene has 5 transcripts (splice variants), 141 orthologues, 37 paralogues and is associated with 14 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000085724.5	Susd4-201	2983	490aa	ENSMUSP00000082873.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15590	Q8BH32-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000153348.8	Susd4-202	1898	490aa	ENSMUSP00000119488.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15590	Q8BH32-1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000155229.7	Susd4-203	734	148aa	ENSMUSP00000142330.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0A6YY90	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000193660.6	Susd4-204	559	104aa	ENSMUSP00000141794.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0A6YX15	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000194981.2	Susd4-205	554	113aa	ENSMUSP00000141475.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0A6YWB1	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,