Gene: Sc5d ENSMUSG00000032018

Description

sterol-C5-desaturase [Source:MGI Symbol;Acc:MGI:1353611]

Gene Synonyms

A830073K23Rik

Location

Chromosome 9: 42,162,891-42,175,552 reverse strand.

GRCm39:CM001002.3

About this gene

This gene has 3 transcripts (splice variants), 250 orthologues, 3 paralogues and is associated with 35 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000052725.15	Sc5d-201	4787	299aa	ENSMUSP00000057354.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS23086	O88822	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000169609.2	Sc5d-202	1677	299aa	ENSMUSP00000130438.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS23086	O88822	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000217513.2	Sc5d-203	703	215aa	ENSMUSP00000149891.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1L1SSH0	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,