Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Export data

Share this page

Bookmark this page

.

Gene: Srrm1 MGP_CAROLIEiJ_G0026636

.

Description

serine and arginine repetitive matrix 1 [Source:NCBI gene;Acc:110292299]

Location

Chromosome 4: 124,992,392-125,024,878 reverse strand.

CAROLI_EIJ_v1.1:LT608246.1

About this gene

This gene has 15 transcripts (splice variants) and 151 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_CAROLIEiJ_T0065143.1	Srrm1-203	3152	923aa	MGP_CAROLIEiJ_P0065143	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CAROLIEiJ_T0065141.1	Srrm1-201	3804	909aa	MGP_CAROLIEiJ_P0065141	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_CAROLIEiJ_T0065142.1	Srrm1-202	3747	918aa	MGP_CAROLIEiJ_P0065142	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_CAROLIEiJ_T0065144.1	Srrm1-204	2947	897aa	MGP_CAROLIEiJ_P0065144	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_CAROLIEiJ_T0065145.1	Srrm1-205	952	317aa	MGP_CAROLIEiJ_P0065145	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_CAROLIEiJ_T0065152.1	Srrm1-212	619	198aa	MGP_CAROLIEiJ_P0065152	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_CAROLIEiJ_T0065150.1	Srrm1-210	796	238aa	MGP_CAROLIEiJ_P0065150	Nonsense mediated decay	-
MGP_CAROLIEiJ_T0065154.1	Srrm1-214	637	140aa	MGP_CAROLIEiJ_P0065154	Nonsense mediated decay	-
MGP_CAROLIEiJ_T0065155.1	Srrm1-215	1077	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_CAROLIEiJ_T0065146.1	Srrm1-206	4548	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0065153.1	Srrm1-213	2860	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0065151.1	Srrm1-211	776	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0065149.1	Srrm1-209	681	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0065148.1	Srrm1-208	509	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0065147.1	Srrm1-207	373	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

.

Strains

.

Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

.

Personal Data