Transcript: ENST00000652202.1 TSPYL1-202

Description

TSPY like 1 [Source:HGNC Symbol;Acc:HGNC:12382]

Gene Synonyms

TSPYL

Location

Chromosome 6: 116,267,760-116,279,887 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 1 domain and feature, is associated with 5127 variant alleles and maps to 277 oligo probes.

Gene

This transcript is a product of gene ENSG00000189241.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000368608.4	TSPYL1-201	5073	437aa	ENSP00000357597.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34518	Q9H0U9	NM_003309.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000652202.1	TSPYL1-202	5875	437aa	ENSP00000498597.1	Nonsense mediated decay	CCDS34518	Q9H0U9	-	-

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 5,875 bps, Translation length: 437 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H0U9

CCDS

This transcript is a member of the Human CCDS set: CCDS34518

Version

ENST00000652202.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENST00000652202.1 TSPYL1-202

Summary

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Transcript: ENST00000652202.1 TSPYL1-202

Summary

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