Transcript: ENST00000644544.2 UPK3BL2-201

Description

uroplakin 3B like 2 [Source:HGNC Symbol;Acc:HGNC:53444]

Location

About this transcript

This transcript has 6 exons, is annotated with 6 domains and features, is associated with 3470 variant alleles and maps to 540 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000644544.2	UPK3BL2-201	1350	263aa	ENSP00000494359.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS87532	E5RIL1	NM_001363506.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,350 bps, Translation length: 263 residues

MANE

This MANE Select transcript contains ENSP00000494359 and matches to NM_001363506.2 and NP_001350435.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: E5RIL1

CCDS

This transcript is a member of the Human CCDS set: CCDS87532

Version

ENST00000644544.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.