Transcript: ENST00000642911.3 TCP11X2-202

Description

t-complex 11 family, X-linked 2 [Source:HGNC Symbol;Acc:HGNC:48335]

Location

Chromosome X: 102,460,315-102,471,812 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 5 domains and features, is associated with 1548 variant alleles and maps to 660 oligo probes.

Gene

This transcript is a product of gene ENSG00000215029.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000642911.3	TCP11X2-202	1758	502aa	ENSP00000496057.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8YGI6	NM_001405027.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000696789.1	TCP11X2-206	4659	51aa	ENSP00000512871.1	Nonsense mediated decay	A0A2R8Y3D8	-	-
ENST00000645197.1	TCP11X2-204	1747	51aa	ENSP00000493581.1	Nonsense mediated decay	A0A2R8Y3D8	-	-
ENST00000643059.1	TCP11X2-203	1584	51aa	ENSP00000495822.1	Nonsense mediated decay	A0A2R8Y3D8	-	-
ENST00000672117.1	TCP11X2-205	1224	312aa	ENSP00000500149.1	Nonsense mediated decay	B4DZS4	-	-
ENST00000462555.1	TCP11X2-201	416	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,758 bps, Translation length: 502 residues

MANE

This MANE Select transcript contains ENSP00000496057 and matches to NM_001405027.1 and NP_001391956.1

Version

ENST00000642911.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported partial

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000642911.3 TCP11X2-202

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Transcript: ENST00000642911.3 TCP11X2-202

Summary

About Us

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