Transcript: ENST00000624267.3 POTEB3-203

Description

POTE ankyrin domain family member B3 [Source:HGNC Symbol;Acc:HGNC:51240]

Location

Chromosome 15: 21,408,243-21,440,451 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 1 domain and feature, is associated with 12065 variant alleles and maps to 1545 oligo probes.

Gene

This transcript is a product of gene ENSG00000278522.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000611217.5	POTEB3-201	5816	581aa	ENSP00000483103.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS73690	A0JP26-1	NM_207355.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000624267.3	POTEB3-203	2855	384aa	ENSP00000485523.1	Nonsense mediated decay		A0A0C4DH93	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000612601.2	POTEB3-202	1989	381aa	ENSP00000483189.1	Nonsense mediated decay		A0JP26-2	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 10, Coding exons: 7, Transcript length: 2,855 bps, Translation length: 384 residues

Transcript Support Level (TSL)

TSL:5

Version

ENST00000624267.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000624267.3 POTEB3-203

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Transcript: ENST00000624267.3 POTEB3-203

Summary

About Us

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