Transcript: ENST00000623824.2 QRFP-202

Description

pyroglutamylated RFamide peptide [Source:HGNC Symbol;Acc:HGNC:29982]

Gene Synonyms

26RFA, P518, PREPRO-26RFA

Location

Chromosome 9: 130,892,707-130,896,812 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 5 domains and features, is associated with 2217 variant alleles and maps to 136 oligo probes.

Gene

This transcript is a product of gene ENSG00000188710.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000623824.2	QRFP-202	1653	136aa	ENSP00000485512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6936	P83859	NM_198180.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000343079.1	QRFP-201	411	136aa	ENSP00000345487.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6936	P83859	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 1,653 bps, Translation length: 136 residues

MANE

This MANE Select transcript contains ENSP00000485512 and matches to NM_198180.3 and NP_937823.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: P83859

CCDS

This transcript is a member of the Human CCDS set: CCDS6936

Transcript Support Level (TSL)

TSL:3

Version

ENST00000623824.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000623824.2 QRFP-202

Summary

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Transcript: ENST00000623824.2 QRFP-202

Summary

About Us

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