Transcript: ENST00000587296.1 FBXW9-202

Description

F-box and WD repeat domain containing 9 [Source:HGNC Symbol;Acc:HGNC:28136]

Gene Synonyms

FBW9, MEC-15, MGC10870

Location

Chromosome 19: 12,688,053-12,696,619 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 1 domain and feature, is associated with 4852 variant alleles and maps to 351 oligo probes.

Gene

This transcript is a product of gene ENSG00000132004.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000393261.8	FBXW9-201	1727	458aa	ENSP00000376945.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12278	Q5XUX1-3	NM_032301.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000587955.1	FBXW9-203	1437	478aa	ENSP00000465387.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5XUX1-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000587296.1	FBXW9-202	1581	172aa	ENSP00000465854.1	Nonsense mediated decay		K7EL01	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 9, Coding exons: 2, Transcript length: 1,581 bps, Translation length: 172 residues

Transcript Support Level (TSL)

TSL:2

Version

ENST00000587296.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000587296.1 FBXW9-202

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Transcript: ENST00000587296.1 FBXW9-202

Summary

About Us

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