Transcript: ENST00000546983.2 SFTA3-212

Description

surfactant associated 3 [Source:NCBI gene (formerly Entrezgene);Acc:253970]

Gene Synonyms

NANCI, PAHRF, SFTPH, SP-H, SPH

Location

Chromosome 14: 36,473,288-36,521,149 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 1 domain and feature, is associated with 22471 variant alleles and maps to 249 oligo probes.

Gene

This transcript is a product of gene ENSG00000257520.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000546983.2	SFTA3-212	1664	136aa	ENSP00000449302.2	Nonsense mediated decay		F8VVG2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000521945.1	SFTA3-211	1116	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 1,664 bps, Translation length: 136 residues

Transcript Support Level (TSL)

TSL:4

Version

ENST00000546983.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000546983.2 SFTA3-212

Summary

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Transcript: ENST00000546983.2 SFTA3-212

Summary

About Us

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