Transcript: ENST00000534392.4 TRIM77-202

Description

tripartite motif containing 77 [Source:HGNC Symbol;Acc:HGNC:34228]

Gene Synonyms

TRIM77P

Location

Chromosome 11: 89,710,650-89,717,806 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 11 domains and features, is associated with 3198 variant alleles and maps to 114 oligo probes.

Gene

This transcript is a product of gene ENSG00000214414.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000398290.7	TRIM77-201	1353	450aa	ENSP00000474003.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS60929	I1YAP6	NM_001146162.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000534392.4	TRIM77-202	705	235aa	ENSP00000474353.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R3H6	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 705 bps, Translation length: 235 residues

Transcript Support Level (TSL)

TSL:1

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000534392.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENST00000534392.4 TRIM77-202

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Transcript: ENST00000534392.4 TRIM77-202

Summary

About Us

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