Transcript: ENST00000531487.1 FDXACB1-203

Description

ferredoxin-fold anticodon binding domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25110]

Gene Synonyms

HCG_2033039, LOC91893

Location

Chromosome 11: 111,874,759-111,879,457 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 1 domain and feature, is associated with 2501 variant alleles and maps to 373 oligo probes.

Gene

This transcript is a product of gene ENSG00000255561.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000260257.9	FDXACB1-201	2774	624aa	ENSP00000260257.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44729	Q9BRP7-1	NM_138378.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000528274.2	FDXACB1-202	1611	396aa	ENSP00000435572.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KUL3	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000531487.1	FDXACB1-203	2206	105aa	ENSP00000431629.1	Nonsense mediated decay		E9PK62	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 2,206 bps, Translation length: 105 residues

Transcript Support Level (TSL)

TSL:1

Version

ENST00000531487.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000531487.1 FDXACB1-203

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Transcript: ENST00000531487.1 FDXACB1-203

Summary

About Us

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