Transcript: ENST00000506644.3 ZMAT2-202

Description

zinc finger matrin-type 2 [Source:HGNC Symbol;Acc:HGNC:26433]

Gene Synonyms

FLJ31121, HSNU23, SNU23

Location

Chromosome 5: 140,700,464-140,705,881 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 1 domain and feature, is associated with 2314 variant alleles and maps to 306 oligo probes.

Gene

This transcript is a product of gene ENSG00000146007.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000274712.8	ZMAT2-201	1544	199aa	ENSP00000274712.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4239	Q96NC0	NM_144723.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000519913.6	ZMAT2-203	521	53aa	ENSP00000473397.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		R4GMX9	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000506644.3	ZMAT2-202	735	129aa	ENSP00000473644.1	Nonsense mediated decay		R4GNG8	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 735 bps, Translation length: 129 residues

Transcript Support Level (TSL)

TSL:3

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000506644.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000506644.3 ZMAT2-202

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Transcript: ENST00000506644.3 ZMAT2-202

Summary

About Us

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