Transcript: ENST00000450844.1 GPATCH3-203

Description

G-patch domain containing 3 [Source:HGNC Symbol;Acc:HGNC:25720]

Gene Synonyms

FLJ12455, GPATC3

Location

Chromosome 1: 26,891,057-26,892,892 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 5 domains and features, is associated with 949 variant alleles and maps to 379 oligo probes.

Gene

This transcript is a product of gene ENSG00000198746.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000361720.10	GPATCH3-201	2125	525aa	ENSP00000354645.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS290	Q96I76	NM_022078.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000445019.5	GPATCH3-202	546	76aa	ENSP00000398563.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y5H5	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000450844.1	GPATCH3-203	521	128aa	ENSP00000399036.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JYG5	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 521 bps, Translation length: 128 residues

Transcript Support Level (TSL)

TSL:2

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000450844.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000450844.1 GPATCH3-203

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Transcript: ENST00000450844.1 GPATCH3-203

Summary

About Us

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