Transcript: ENST00000437098.5 TRAPPC3L-203

Description

trafficking protein particle complex subunit 3L [Source:HGNC Symbol;Acc:HGNC:21090]

Gene Synonyms

BA259P20.2, BET3L, FLJ11180

Location

Chromosome 6: 116,496,483-116,543,400 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 8 domains and features, is associated with 19512 variant alleles and maps to 178 oligo probes.

Gene

This transcript is a product of gene ENSG00000173626.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000368602.4	TRAPPC3L-202	2681	181aa	ENSP00000357591.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47468	Q5T215-1	NM_001139444.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000356128.4	TRAPPC3L-201	2421	97aa	ENSP00000348445.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T215-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000437098.5	TRAPPC3L-203	975	167aa	ENSP00000395769.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0A0MSL6	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 975 bps, Translation length: 167 residues

Transcript Support Level (TSL)

TSL:3

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000437098.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000437098.5 TRAPPC3L-203

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Transcript: ENST00000437098.5 TRAPPC3L-203

Summary

About Us

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