Transcript: ENST00000427575.6 DOHH-201

Description

deoxyhypusine hydroxylase [Source:HGNC Symbol;Acc:HGNC:28662]

Gene Synonyms

HLRC1, MGC4293

Location

Chromosome 19: 3,490,824-3,500,674 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 21 domains and features, is associated with 5047 variant alleles and maps to 277 oligo probes.

Gene

This transcript is a product of gene ENSG00000129932.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000427575.6	DOHH-201	1763	302aa	ENSP00000398882.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12108	Q9BU89	NM_001145165.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000672935.1	DOHH-203	1757	302aa	ENSP00000500806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12108	Q9BU89	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000671696.1	DOHH-202	703	195aa	ENSP00000499813.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A5F9ZGM7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000673168.1	DOHH-204	884	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,763 bps, Translation length: 302 residues

MANE

This MANE Select transcript contains ENSP00000398882 and matches to NM_001145165.2 and NP_001138637.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BU89

CCDS

This transcript is a member of the Human CCDS set: CCDS12108

Transcript Support Level (TSL)

TSL:1

Version

ENST00000427575.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000427575.6 DOHH-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000427575.6 DOHH-201

Summary

About Us

Get help

Our sister sites

Follow us