Transcript: ENST00000424117.5 INO80D-203

Description

INO80 complex subunit D [Source:HGNC Symbol;Acc:HGNC:25997]

Gene Synonyms

FLJ20309

Location

Chromosome 2: 206,009,705-206,063,244 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 12 domains and features, is associated with 22185 variant alleles and maps to 263 oligo probes.

Gene

This transcript is a product of gene ENSG00000114933.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000403263.6	INO80D-201	14128	1027aa	ENSP00000384198.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46500	Q53TQ3	NM_017759.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000424117.5	INO80D-203	1664	439aa	ENSP00000402369.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JLZ4	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000414320.1	INO80D-202	753	37aa	ENSP00000409031.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JLV2	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 6, Transcript length: 1,664 bps, Translation length: 439 residues

Transcript Support Level (TSL)

TSL:5

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000424117.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not organism-supported [Definitions]

Transcript: ENST00000424117.5 INO80D-203

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Transcript: ENST00000424117.5 INO80D-203

Summary

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