Transcript: ENST00000409568.6 SH2D7-202

Description

SH2 domain containing 7 [Source:HGNC Symbol;Acc:HGNC:34549]

Gene Synonyms

LOC646892

Location

Chromosome 15: 78,077,808-78,104,370 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 9 domains and features, is associated with 11102 variant alleles and maps to 233 oligo probes.

Gene

This transcript is a product of gene ENSG00000183476.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000328828.6	SH2D7-201	2227	451aa	ENSP00000327846.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45315	A6NKC9	NM_001101404.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000409568.6	SH2D7-202	2162	315aa	ENSP00000386676.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZB5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 2,162 bps, Translation length: 315 residues

Transcript Support Level (TSL)

TSL:5

Version

ENST00000409568.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

dotter confirmed [Definitions]

not organism-supported

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000409568.6 SH2D7-202

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Transcript: ENST00000409568.6 SH2D7-202

Summary

About Us

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