Transcript: ENST00000394005.4 ACSM6-202

Description

acyl-CoA synthetase medium chain family member 6 [Source:HGNC Symbol;Acc:HGNC:31665]

Gene Synonyms

BA310E22.3, C10ORF129

Location

Chromosome 10: 95,194,238-95,228,929 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 6 domains and features, is associated with 13575 variant alleles and maps to 332 oligo probes.

Gene

This transcript is a product of gene ENSG00000173124.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000394005.4	ACSM6-202	1675	480aa	ENSP00000377573.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7440	Q6P461-1	NM_207321.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000327739.7	ACSM6-201	2307	141aa	ENSP00000328491.3	Nonsense mediated decay		H7BXS6	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000404473.6	ACSM6-203	1336	85aa	ENSP00000384922.2	Nonsense mediated decay		H7BYZ2	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 1,675 bps, Translation length: 480 residues

MANE

This MANE Select transcript contains ENSP00000377573 and matches to NM_207321.3 and NP_997204.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6P461

CCDS

This transcript is a member of the Human CCDS set: CCDS7440

Transcript Support Level (TSL)

TSL:5

Version

ENST00000394005.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000394005.4 ACSM6-202

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Transcript: ENST00000394005.4 ACSM6-202

Summary

About Us

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