Transcript: ENST00000291672.6 SPATC1L-201

Description

spermatogenesis and centriole associated 1 like [Source:HGNC Symbol;Acc:HGNC:1298]

Gene Synonyms

C21ORF56

Location

Chromosome 21: 46,161,160-46,184,459 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 10 domains and features, is associated with 11892 variant alleles and maps to 343 oligo probes.

Gene

This transcript is a product of gene ENSG00000160284.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000291672.6	SPATC1L-201	2304	340aa	ENSP00000291672.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46653	Q9H0A9-1	NM_001142854.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000330205.10	SPATC1L-202	1182	186aa	ENSP00000333869.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13732	Q9H0A9-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 2,304 bps, Translation length: 340 residues

MANE

This MANE Select transcript contains ENSP00000291672 and matches to NM_001142854.2 and NP_001136326.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H0A9

CCDS

This transcript is a member of the Human CCDS set: CCDS46653

Transcript Support Level (TSL)

TSL:2

Version

ENST00000291672.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000291672.6 SPATC1L-201

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Transcript: ENST00000291672.6 SPATC1L-201

Summary

About Us

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