Transcript: ENST00000684260.1 RTP3-202

Description

receptor transporter protein 3 [Source:HGNC Symbol;Acc:HGNC:15572]

Gene Synonyms

LTM1, TMEM7, Z3CXXC3

Location

Chromosome 3: 46,494,611-46,500,950 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 3288 variant alleles and maps to 257 oligo probes.

Gene

This transcript is a product of gene ENSG00000163825.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000296142.4	RTP3-201	837	232aa	ENSP00000296142.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2740	Q9BQQ7	NM_031440.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000684260.1	RTP3-202	1578	232aa	ENSP00000507138.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2740	Q9BQQ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 1,578 bps, Translation length: 232 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BQQ7

CCDS

This transcript is a member of the Human CCDS set: CCDS2740

Version

ENST00000684260.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000684260.1 RTP3-202

Summary

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Transcript: ENST00000684260.1 RTP3-202

Summary

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