Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: sqd FBgn0263396

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Description

squid

Gene Synonyms

sqd

Location

Primary_assembly 3R: 13,634,862-13,646,304 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 5 transcripts (splice variants), 2 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
FBtr0082855	sqd-RB	2115	344aa	FBpp0082320	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08473	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
FBtr0082854	sqd-RA	5551	321aa	FBpp0082319	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
FBtr0309094	sqd-RE	2844	308aa	FBpp0301102	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6U6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
FBtr0082856	sqd-RC	2239	308aa	FBpp0082321	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6U6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
FBtr0082857	sqd-RD	1983	178aa	FBpp0089309	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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