retinal degeneration A
rdgA
Primary_assembly X: 8,907,068-9,029,476 forward strand.
BDGP6.46:AE014298.5
This gene has 11 transcripts (splice variants), 1972 orthologues and 4 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| FBtr0333601 | rdgA-RH | 8292 | 1462aa | FBpp0305778 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A9YK83 M9PHG3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, |
| FBtr0333602 | rdgA-RI | 10147 | 1460aa | FBpp0305779 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A9YK80 F6J4T3 M9PH20 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0479750 | rdgA-RL | 5808 | 1365aa | FBpp0428093 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A6H2EFG8 C0PVA9 | - |
| FBtr0302660 | rdgA-RA | 5598 | 1457aa | FBpp0291800 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F6J4T4 Q09103 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0302665 | rdgA-RG | 5583 | 1452aa | FBpp0291805 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9MS31 | - |
| FBtr0344166 | rdgA-RK | 5561 | 1314aa | FBpp0310580 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | X2JEJ9 | - |
| FBtr0344165 | rdgA-RJ | 5497 | 1307aa | FBpp0310579 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | X2JE67 | - |
| FBtr0302662 | rdgA-RC | 4974 | 1024aa | FBpp0291802 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0302663 | rdgA-RD | 4276 | 1009aa | FBpp0291803 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9MSN3 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0302664 | rdgA-RE | 4222 | 991aa | FBpp0291804 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A023GPM5 Q29QH6 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0302661 | rdgA-RB | 3919 | 1027aa | FBpp0291801 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, |
