Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: alpha-Spec FBgn0250789

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Description

alpha Spectrin

Gene Synonyms

alpha-Spec

Location

Primary_assembly 3L: 1,778,485-1,795,328 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 4 transcripts (splice variants), 236 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
FBtr0332878	alpha-Spec-RB	7721	2457aa	FBpp0305100	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGV6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
FBtr0332879	alpha-Spec-RC	8317	2447aa	FBpp0305101	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBI5	-
FBtr0332880	alpha-Spec-RD	8251	2425aa	FBpp0305102	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDQ0	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
FBtr0072789	alpha-Spec-RA	8221	2415aa	FBpp0072672	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P13395	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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