Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: vari FBgn0250785

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Description

varicose

Gene Synonyms

vari

Location

Primary_assembly 2L: 20,788,662-20,797,042 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 5 transcripts (splice variants), 1563 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
FBtr0089947	vari-RB	2610	636aa	FBpp0088886	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1XXK1 A1XXK3 A1XXK4 D6W4X0 Q7KT16 Q8SXI6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
FBtr0089945	vari-RD	2717	615aa	FBpp0088884	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MR96 Q9VIJ4	-
FBtr0335146	vari-RE	2535	611aa	FBpp0307145	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1XXK0 A1XXK7 M9PDB2	-
FBtr0335501	vari-RF	2379	469aa	FBpp0307469	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1XXK2 A1XXK5 Q2PDR9	-
FBtr0089946	vari-RC	2320	469aa	FBpp0088885	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q2PDR9	-

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Summary

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