Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CG3078 FBgn0023524

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Gene Synonyms

CG3078

Location

Primary_assembly X: 2,254,403-2,259,863 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 4 transcripts (splice variants), 223 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
FBtr0474238	CG3078-RD	3979	765aa	FBpp0423191	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4D6K3U9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
FBtr0340208	CG3078-RB	3982	744aa	FBpp0309183	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O46076 X2JDK7	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
FBtr0474141	CG3078-RC	3979	749aa	FBpp0423140	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4D6K262 Q8SXC8	-
FBtr0070415	CG3078-RA	3979	743aa	FBpp0070399	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W502	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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