Transcript: ENSDART00000162720.2 xrn2-201

Description

5'-3' exoribonuclease 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2874]

Location

About this transcript

This transcript has 32 exons, is associated with 1185 variant alleles and maps to 311 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000163071.2	xrn2-202	3631	952aa	ENSDARP00000138850.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ISJ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000170617.2	xrn2-204	1623	540aa	ENSDARP00000137023.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000163271.2	xrn2-203	818	273aa	ENSDARP00000137463.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000162720.2	xrn2-201	3262	540aa	ENSDARP00000135647.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 32, Coding exons: 18, Transcript length: 3,262 bps, Translation length: 540 residues

Version

ENSDART00000162720.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.