Transcript: ENSDART00000139100.3 eif4ba-202

Description

eukaryotic translation initiation factor 4Ba [Source:ZFIN;Acc:ZDB-GENE-060629-1]

Location

Chromosome 23: 10,426,219-10,449,005 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 14 domains and features, is associated with 568 variant alleles and maps to 175 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000017439.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000167593.3	eif4ba-204	6370	616aa	ENSDARP00000135390.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IMF6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000125103.4	eif4ba-201	2492	529aa	ENSDARP00000112056.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QAA4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000139100.3	eif4ba-202	1100	251aa	ENSDARP00000119691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000144267.2	eif4ba-203	406	111aa	ENSDARP00000113681.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,100 bps, Translation length: 251 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000139100.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000139100.3 eif4ba-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000139100.3 eif4ba-202

Summary

About Us

Get help

Our sister sites

Follow us