Transcript: ENSDART00000106488.2 plod2-202

Description

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 [Source:ZFIN;Acc:ZDB-GENE-070326-1]

Location

Chromosome 24: 5,237,753-5,314,707 forward strand.

About this transcript

This transcript has 19 exons, is annotated with 10 domains and features, is associated with 935 variant alleles and maps to 221 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000011821.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000005901.9	plod2-201	3370	754aa	ENSDARP00000012147.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4U7F9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000106488.2	plod2-202	3307	733aa	ENSDARP00000097266.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4U7F8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000128182.3	plod2-203	1190	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000140035.2	plod2-204	645	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 3,307 bps, Translation length: 733 residues

Version

ENSDART00000106488.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000106488.2 plod2-202

Summary

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Transcript: ENSDART00000106488.2 plod2-202

Summary

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