Transcript: ENSDART00000156648.2 otx2b-203

Description

orthodenticle homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-406]

Location

About this transcript

This transcript has 5 exons, is annotated with 22 domains and features, is associated with 108 variant alleles and maps to 165 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000126097.4	otx2b-202	2212	289aa	ENSDARP00000111153.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1RM25 Q91981	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000008816.8	otx2b-201	2162	289aa	ENSDARP00000020202.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1RM25 Q91981	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000156648.2	otx2b-203	922	205aa	ENSDARP00000128250.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 922 bps, Translation length: 205 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000156648.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.