Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: pcdh1a6 ENSDARG00000104598

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Description

protocadherin 1 alpha 6 [Source:ZFIN;Acc:ZDB-GENE-050203-2]

Location

Chromosome 10: 21,559,605-21,648,767 forward strand.

GRCz11:CM002894.2

About this gene

This gene has 4 transcripts (splice variants), 29 orthologues and 64 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166533.2	pcdh1a6-203	5299	939aa	ENSDARP00000138315.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I6LC33	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000168604.2	pcdh1a6-204	1928	184aa	ENSDARP00000131141.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000123648.3	pcdh1a6-202	1813	129aa	ENSDARP00000110356.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000100599.3	pcdh1a6-201	723	240aa	ENSDARP00000091372.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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