Transcript: T13C2.6a.1

Description

EGF-like domain-containing protein [Source:NCBI gene;Acc:174116]

Location

About this transcript

This transcript has 13 exons, is annotated with 78 domains and features and maps to 92 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
T13C2.6b.1	-	3350	911aa	T13C2.6b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JP80	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
T13C2.6a.1	-	3346	909aa	T13C2.6a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2KZX4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 3,346 bps, Translation length: 909 residues

Version

T13C2.6a.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase