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Public datahubs

Ensembl now provides support for datahubs (also known as track hubs), which are an alternative to DAS for sharing large quantities of annotation over the internet. We do not host these datahubs ourselves, but a list of publicly accessible hubs is given below. Just click on a link to attach the hub to the appropriate species' Region in detail view.

Please note that tracks are not turned on by default, as there can be thousands in a hub. The link will open the control panel at the correct menu, where you can turn on individual tracks.

Remote hubs may be slow to load or unavailable.

IMPORTANT NOTE: Datahubs on older assemblies have links to Ensembl archives where this functionality is available.

Datahub nameDescriptionSpecies and assembly
Blueprint HubBlueprint Epigenomics Data Hub

Human Human (GRCh37)

ENCODE Analysis HubENCODE Integrative Analysis Data Hub

Human Human (GRCh37)

Broad Improved Canine Annotation v1Broad Institute CanFam3 Improved Annotation Data v1

Dog Dog (CanFam3)

Cancer genome polyA site & usageAn in-depth map of polyadenylation sites in cancer (matched-pair tissues and cell lines)

Human Human (GRCh37)

CEMT (CEEHRC)Epigenomic Data tracks from BCGSC, Vancouver

Human Human (GRCh37)

DNA MethylationDNA Methylation Hundreds of analyzed methylomes from bisulfite sequencing data

Human Human (GRCh37)

Human Human (NCBI36)

Mouse Mouse (GRCm38)

Mouse Mouse (NCBIm37)

Chimpanzee Chimpanzee (CHIMP2.1.4)

McGill EMC (CEEHRC)McGill Epigenomics Mapping Centre, Montreal, Quebec, Canada

Human Human (GRCh37)

miRcode microRNA sitesPredicted microRNA target sites in GENCODE transcripts

Human Human (GRCh37)

Roadmap Epigenomics DataRoadmap Epigenomics Human Epigenome Atlas Data Complete Collection, VizHub at Washington University in St. Louis

Human Human (GRCh37)

Roadmap Epigenomics Integrative Analysis HubRoadmap Epigenomics Integrative Analysis Hub at Washington University in St. Louis

Human Human (GRCh37)

SDSU NATSense/antisense gene/exon expression using Affymetrix exon array from South Dakota State University, USA

Human Human (GRCh37)

Mouse Mouse (NCBIm37)

Rat Rat (RGSC_3.4)

Translation Initiation Sites (TIS)Translation Initiation Sites (TIS) track

Human Human (GRCh37)

Ultraconserved ElementsUltra conserved Elements in the Human Genome Science 304(5675) pp.1321-1325 (2004)

Human Human (GRCh37)

UMassMed ZHubUMassMed H3K4me3 ChIP-seq data for Autistic brains

Human Human (GRCh37)