eHive production system init_pipeline manual
[-help | [ [-analysis_topup | -job_topup] ]
init_pipeline.pl is a generic script that is used to create+setup=initialize eHive pipelines from PipeConfig configuration modules.
get this help message:
initialize a generic eHive pipeline:
init_pipeline.pl Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf -password
see what command line options are available when initializing long multiplication example pipeline (assuming your current directory is ensembl-hive/modules/Bio/EnsEMBL/Hive) :
init_pipeline.pl PipeConfig/LongMult_conf.pm -help
initialize the long multiplicaton pipeline by supplying not only mandatory but also optional data: (assuming your current directory is ensembl-hive/modules/Bio/EnsEMBL/Hive/PipeConfig) :init_pipeline.pl LongMult_conf -password
-help : get automatically generated list of options that can be set/changed when initializing a particular pipeline -analysis_topup : a special initialization mode when (1) pipeline_create_commands are switched off and (2) only newly defined analyses are added to the database This mode is only useful in the process of putting together a new pipeline. -job_topup : another special initialization mode when only jobs are created - no other structural changes to the pipeline are acted upon.
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