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eHive production system init_pipeline manual

NAME

    init_pipeline.pl

SYNOPSIS

    init_pipeline.pl  [-help | [ [-analysis_topup | -job_topup] ]

DESCRIPTION

    init_pipeline.pl is a generic script that is used to create+setup=initialize eHive pipelines from PipeConfig configuration modules.

USAGE EXAMPLES

get this help message:

    init_pipeline.pl

initialize a generic eHive pipeline:

    init_pipeline.pl Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf -password 

see what command line options are available when initializing long multiplication example pipeline (assuming your current directory is ensembl-hive/modules/Bio/EnsEMBL/Hive) :

    init_pipeline.pl PipeConfig/LongMult_conf.pm -help

initialize the long multiplicaton pipeline by supplying not only mandatory but also optional data: (assuming your current directory is ensembl-hive/modules/Bio/EnsEMBL/Hive/PipeConfig) : init_pipeline.pl LongMult_conf -password -first_mult 375857335 -second_mult 1111333355556666

OPTIONS

    -help           :   get automatically generated list of options that can be set/changed when initializing a particular pipeline

    -analysis_topup :   a special initialization mode when (1) pipeline_create_commands are switched off and (2) only newly defined analyses are added to the database
                        This mode is only useful in the process of putting together a new pipeline.

    -job_topup      :   another special initialization mode when only jobs are created - no other structural changes to the pipeline are acted upon.

CONTACT

Please contact ehive-users@ebi.ac.uk mailing list with questions/suggestions.

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