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Transcript: MGP_FVBNJ_T0083548.1

Description

Usher syndrome 1C [Source:MGI Symbol;Acc:MGI:1919338]

Gene Synonyms

2010016F01Rik, harmonin

Location

Chromosome 7: 45,081,230-45,124,421 reverse strand.

Reference strain equivalent

Ush1c

About this transcript

This transcript has 21 exons, is annotated with 33 domains and features and maps to 216 oligo probes.

Gene

This transcript is a product of gene MGP_FVBNJ_G0032041.1 Show transcript tableHide transcript table

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
MGP_FVBNJ_T0083550.1-3072910aaMGP_FVBNJ_P0083550
 
Protein coding
-Ensembl Canonical
MGP_FVBNJ_T0083551.1-2767891aaMGP_FVBNJ_P0083551
 
Protein coding
--
MGP_FVBNJ_T0083548.1-2047548aaMGP_FVBNJ_P0083548
 
Protein coding
CCDS21276, CCDS39963, CCDS52250A0A0R4J0Z8 D6RIM8 E9PYX1
E9QMN1 H3BIZ2 H3BLC4
-
MGP_FVBNJ_T0083553.1-1865517aaMGP_FVBNJ_P0083553
 
Protein coding
--
MGP_FVBNJ_T0083552.1-1696529aaMGP_FVBNJ_P0083552
 
Protein coding
--
MGP_FVBNJ_T0083549.1-3036859aaMGP_FVBNJ_P0083549
 
Nonsense mediated decay
--
MGP_FVBNJ_T0083555.1-395No protein-
 
Processed transcript
--
MGP_FVBNJ_T0083554.1-708No protein-
 
Retained intron
--

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 2,047 bps, Translation length: 548 residues

CCDS

This transcript is a member of the Mouse FVB/NJ CCDS set: CCDS21276, CCDS39963, CCDS52250

Version

MGP_FVBNJ_T0083548.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.