Transcript: MGP_FVBNJ_T0052343.1

Description

vimentin [Source:MGI Symbol;Acc:MGI:98932]

Location

Chromosome 2: 10,454,845-10,455,751 forward strand.

Reference strain equivalent

Vim

About this transcript

This transcript has 2 exons, is annotated with 13 domains and features and maps to 70 oligo probes.

Gene

This transcript is a product of gene MGP_FVBNJ_G0025163.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_FVBNJ_T0052344.1	-	2193	466aa	MGP_FVBNJ_P0052344	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_FVBNJ_T0052345.1	-	1777	427aa	MGP_FVBNJ_P0052345	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_FVBNJ_T0052343.1	-	574	134aa	MGP_FVBNJ_P0052343	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15696	A0A0A6YWC8 A2AKJ2 P20152 Q5FWJ3	-
MGP_FVBNJ_T0052347.1	-	2926	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_FVBNJ_T0052346.1	-	926	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_FVBNJ_T0052348.1	-	535	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 574 bps, Translation length: 134 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P20152

CCDS

This transcript is a member of the Mouse FVB/NJ CCDS set: CCDS15696

Version

MGP_FVBNJ_T0052343.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_FVBNJ_T0052343.1

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: MGP_FVBNJ_T0052343.1

Summary

About Us

Get help

Our sister sites

Follow us