Transcript: MGP_CASTEiJ_T0034370.1

Description

interferon-related developmental regulator 1 [Source:MGI Symbol;Acc:MGI:1316717]

Gene Synonyms

Ifnl, PC4, Tis7

Location

Chromosome 12: 33,598,822-33,620,961 reverse strand.

Reference strain equivalent

Ifrd1

About this transcript

This transcript has 12 exons, is annotated with 12 domains and features and maps to 250 oligo probes.

Gene

This transcript is a product of gene MGP_CASTEiJ_G0019003.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_CASTEiJ_T0034370.1	-	3382	449aa	MGP_CASTEiJ_P0034370	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS25893	E9PVS0 E9PZB9 E9Q1E6 E9Q949 E9QA38 E9QA50 F6TBT6 P19182	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CASTEiJ_T0034374.1	-	660	138aa	MGP_CASTEiJ_P0034374	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0034378.1	-	616	86aa	MGP_CASTEiJ_P0034378	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0034376.1	-	607	100aa	MGP_CASTEiJ_P0034376	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0034379.1	-	606	137aa	MGP_CASTEiJ_P0034379	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0034371.1	-	491	85aa	MGP_CASTEiJ_P0034371	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0034375.1	-	445	119aa	MGP_CASTEiJ_P0034375	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0034373.1	-	1108	148aa	MGP_CASTEiJ_P0034373	Nonsense mediated decay		-	-
MGP_CASTEiJ_T0034377.1	-	2297	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_CASTEiJ_T0034372.1	-	573	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 3,382 bps, Translation length: 449 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P19182

CCDS

This transcript is a member of the Mouse CAST/EiJ CCDS set: CCDS25893

Version

MGP_CASTEiJ_T0034370.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_CASTEiJ_T0034370.1

Summary

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Transcript: MGP_CASTEiJ_T0034370.1

Summary

About Us

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