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Transcript: MGP_C57BL6NJ_T0075552.1

Description

cut-like homeobox 1 [Source:MGI Symbol;Acc:MGI:88568]

Gene Synonyms

CDP, Cutl1, Cux, Cux-1

Location

Chromosome 5: 146,117,913-146,466,367 reverse strand.

Reference strain equivalent

Cux1

About this transcript

This transcript has 23 exons, is annotated with 18 domains and features and maps to 365 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0030637.1 Show transcript tableHide transcript table

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
MGP_C57BL6NJ_T0075562.1-45661521aaMGP_C57BL6NJ_P0075562
 
Protein coding
-Ensembl Canonical
MGP_C57BL6NJ_T0075557.1-128621426aaMGP_C57BL6NJ_P0075557
 
Protein coding
--
MGP_C57BL6NJ_T0075558.1-109451504aaMGP_C57BL6NJ_P0075558
 
Protein coding
--
MGP_C57BL6NJ_T0075559.1-55201509aaMGP_C57BL6NJ_P0075559
 
Protein coding
--
MGP_C57BL6NJ_T0075560.1-48821517aaMGP_C57BL6NJ_P0075560
 
Protein coding
--
MGP_C57BL6NJ_T0075554.1-2831676aaMGP_C57BL6NJ_P0075554
 
Protein coding
--
MGP_C57BL6NJ_T0075552.1-2821678aaMGP_C57BL6NJ_P0075552
 
Protein coding
CCDS39328, CCDS57391, CCDS71684, CCDS71685E9QKE9 H3BJ26 H3BJL7
H3BJN3 H3BJQ9 H3BK24
H3BKF6 H3BKT0 H3BL09
H3BLJ7 H3BLS0 		-
MGP_C57BL6NJ_T0075553.1-2195472aaMGP_C57BL6NJ_P0075553
 
Protein coding
--
MGP_C57BL6NJ_T0075563.1-805268aaMGP_C57BL6NJ_P0075563
 
Protein coding
--
MGP_C57BL6NJ_T0075555.1-2565199aaMGP_C57BL6NJ_P0075555
 
Nonsense mediated decay
--
MGP_C57BL6NJ_T0075556.1-1926543aaMGP_C57BL6NJ_P0075556
 
Nonsense mediated decay
--
MGP_C57BL6NJ_T0075561.1-1885No protein-
 
Processed transcript
--
MGP_C57BL6NJ_T0075565.1-3292No protein-
 
Retained intron
--
MGP_C57BL6NJ_T0075564.1-1616No protein-
 
Retained intron
--

Summary

Statistics

Exons: 23, Coding exons: 23, Transcript length: 2,821 bps, Translation length: 678 residues

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS39328, CCDS57391, CCDS71684, CCDS71685

Version

MGP_C57BL6NJ_T0075552.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.