Transcript: ENST00000685335.1 SPRN-202

Description

shadow of prion protein [Source:HGNC Symbol;Acc:HGNC:16871]

Gene Synonyms

BA108K14.1, FLJ41197, SHADOO

Location

Chromosome 10: 133,420,666-133,424,625 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 10 domains and features, is associated with 3050 variant alleles and maps to 321 oligo probes.

Gene

This transcript is a product of gene ENSG00000203772.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000685335.1	SPRN-202	3185	151aa	ENSP00000510252.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53589	Q5BIV9	NM_001391974.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000414069.2	SPRN-201	3128	151aa	ENSP00000433712.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53589	Q5BIV9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 3,185 bps, Translation length: 151 residues

MANE

This MANE Select transcript contains ENSP00000510252 and matches to NM_001391974.1 and NP_001378903.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5BIV9

CCDS

This transcript is a member of the Human CCDS set: CCDS53589

Version

ENST00000685335.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000685335.1 SPRN-202

Summary

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Transcript: ENST00000685335.1 SPRN-202

Summary

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